Gut-Brain Connection
Synopsis
The Gut–Brain Connection (Gut–Brain Axis)
Definition and Overview
The gut–brain axis (GBA) consists of bidirectional communication between the central and the enteric nervous system, linking emotional and cognitive centers of the brain with peripheral intestinal functions. Recent advances in research have described the importance of gut microbiota in influencing these interactions, and the interaction between microbiota and the GBA appears to be bidirectional — signaling from gut microbiota to brain and from brain to gut microbiota — by means of neural, endocrine, immune, and humoral links.
Insights into the gut–brain crosstalk have revealed a complex communication system that not only ensures the proper maintenance of gastrointestinal homeostasis, but is likely to have multiple effects on affect, motivation, and higher cognitive functions. In recognition of the central role of the microbiome in this network, researchers now frequently use the term microbiota–gut–brain axis (MGBA). In recent years, evidence has highlighted the pivotal role of the gut microbiota in modulating this axis, forming what is designated as the microbiota–gut–brain axis (MGBA).
Preclinical evidence has firmly established bidirectional interactions among the brain, the gut, and the gut microbiome. Candidate signaling molecules and at least three communication channels have been identified. Communication within this system is nonlinear, is bidirectional with multiple feedback loops, and likely involves interactions between different channels.
Body Systems Involved
Broadly defined, the gut–brain axis includes the central nervous system, neuroendocrine system, neuroimmune systems, the hypothalamic–pituitary–adrenal axis (HPA axis), sympathetic and parasympathetic arms of the autonomic nervous system, the enteric nervous system, vagus nerve, and the gut microbiota.
The Enteric Nervous System
The enteric nervous system (ENS), often referred to as the "second brain," is embedded within the walls of the gastrointestinal tract and contains over 500 million neurons that function independently to regulate gastrointestinal motility, secretion, and blood flow. The enteric nervous system operates semi-independently but remains in constant communication with the brain, allowing gut microbes to influence neural processes such as mood regulation, stress response, and neurodevelopment.
The Vagus Nerve
The microbiota, the gut, and the brain communicate through the microbiota–gut–brain axis in a bidirectional way that involves the autonomic nervous system. The vagus nerve (VN), the principal component of the parasympathetic nervous system, is a mixed nerve composed of 80% afferent and 20% efferent fibers. The VN, because of its role in interoceptive awareness, is able to sense microbiota metabolites through its afferents, transfer this gut information to the central nervous system where it is integrated in the central autonomic network, and then generate an adapted or inappropriate response.
A cholinergic anti-inflammatory pathway has been described through VN's fibers, which is able to dampen peripheral inflammation and to decrease intestinal permeability, thus very probably modulating microbiota composition. The VN, while crucial in various physiological processes, can become a double-edged sword by transmitting detrimental signals from an imbalanced microbiome to the brain in cases of dysbiosis.
The HPA Axis and Neuroendocrine Pathway
The imbalance of the microbiota will destroy the intestinal barrier tight junction protein, leading to the entry of inflammatory factors into the nervous system and causing cognitive impairment. The HPA axis is an endocrine communication pathway between the brain and the gut. Microorganisms can influence CNS processes bidirectionally via the vagus nerve and through modulation of the immune system, the hypothalamic–pituitary–adrenal (HPA) axis, and tryptophan metabolism, along with their ability to synthesize a number of neurotransmitters and produce metabolites, such as short-chain fatty acids (SCFAs), that possess neuroactive properties.
The Immune Pathway
Communications via the immune system occur through cytokines produced in the gut and can travel to the brain through the bloodstream. Gut infection, SIBO, and dysbiosis are associated with a disrupted gut barrier, overactivation of the inflammasome, and release of inflammatory cytokines leading to systemic inflammation. Blood–brain barrier (BBB) disruption from systemic inflammation initiates the neuroinflammatory response and alters homeostatic mechanisms.
Serotonin and the Gut
As specialized enteroendocrine cells, enterochromaffin (EC) cells produce up to 95% of total body serotonin and coordinate luminal and basolateral communication in the gastrointestinal tract. EC cells affect a broad range of gut physiological processes, such as motility, absorption, secretion, chemo/mechanosensation, and pathologies, including visceral hypersensitivity, immune dysfunction, and impaired gastrointestinal barrier function.
Approximately 90% of the body's serotonin is synthesized in the gut, predominantly by enterochromaffin cells. This gut-derived serotonin not only regulates local intestinal functions, such as peristalsis and secretion, but also exerts systemic effects by activating vagal afferent fibers. These fibers relay serotonergic signals to the nucleus tractus solitarius (NTS) in the brainstem, where they are processed and transmitted to higher brain regions.
Microbiota-derived SCFAs regulate the release of gut peptides from enteroendocrine cells and have been shown to regulate the synthesis of gut-derived serotonin from enterochromaffin cells, both of which in turn affect gut–brain hormonal communication.
The Gut Microbiota Itself
The gut microbiota plays a role in central nervous system functions (i.e., mood and psychiatric conditions associated with stress and memory) and is a central regulator of metabolism and appetite. Neuroactive compounds are released by bacteria such as γ-aminobutyric acid (GABA), serotonin, dopamine, and acetylcholine (ACh), and essentially act locally on the enteric nervous system.
How the Gut–Brain Connection Presents: Associated Conditions
Dysbiosis has been associated with altered gut–brain signaling and implicated in the pathophysiology of disorders ranging from irritable bowel syndrome to mood disorders and neurodegeneration. Dysbiosis — altered microbial composition and function — is implicated in the rising global burden of neurodegenerative (Alzheimer's, Parkinson's), psychiatric (depression, anxiety, autism spectrum disorder), functional gastrointestinal (IBS, functional dyspepsia), cardiovascular, and metabolic disorders (obesity, diabetes).
A perturbation of this axis is involved in the pathophysiology of gastrointestinal disorders such as irritable bowel syndrome (IBS) and inflammatory bowel disease (IBD), which are biopsychosocial diseases. IBS can be seen as a "stress disease" and has been studied from different perspectives at virtually all levels of the gut–brain–microbiome axis. There is evidence for HPA axis and autonomic nervous system involvement, comorbidity of anxiety and depression, increased interoception, and altered neuronal pain processing.
With respect to neurodegeneration, the gut–brain axis theory proposed by Braak suggests that α-synuclein aggregation and misfolding in Parkinson's disease may begin in the ENS due to infection and inflammation, later spreading to the CNS and causing central neuropathy. Studies show that α-synuclein injected into the intestinal muscular layer translocates to the brain via vagus nerve fibers in a time-dependent manner, supporting the hypothesis that Parkinson's disease may originate in the gastrointestinal tract.
Contributing and Associated Factors
Compositional Factors: The Gut Microbiota
An individual's gut microbiota composition depends on the mode of delivery at birth, genetic predisposition, age, nutrition, physical activity, environmental factors, stress, infections, other diseases, and use of antibiotics. The gut microbiota is composed of four major phyla — Bacteroidetes, Firmicutes, Proteobacteria, and Actinobacteria — and two minor phyla, Verrucomicrobia and Fusobacteria.
Psychological Stress
Acute gastroenteritis, antibiotics, and stress are dominant risk factors for intestinal dysbiosis and subsequent IBS in both adults and children. An increase in inflammation in the bowel wall may result in a chronic, subclinical, low-grade inflammation that is sufficient to alter neuromuscular and epithelial cell function. The contribution of such a microbiota–immune interaction to stress-associated pathologies is supported by the observation that exposure to repeated stress affects the gut microbiota in a manner that correlates with changes in levels of pro-inflammatory cytokines.
Early Life Factors
An important factor for the development of IBS is early-life stressors, especially maternal separation, which may have long-term effects on the microbiota. In animal studies, stress-induced changes in physiology resulted in dysbiosis, and the dysbiotic microbiota was required for stress-induced anxiety-like behavior to manifest.
Antibiotic Exposure
Antibiotic exposure during the first year of life is associated with higher rates of behavioural problems, depressive symptoms, and neurocognitive decline later in life. Other reports have documented psychiatric side effects, including anxiety and major depression, in patients receiving antibiotics, suggesting that dysbiosis can causally contribute to mental health disorders. Preclinical research confirms that antibiotic-induced dysbiosis can provoke anxiety- and depression-like behaviours in rodents, and fecal microbiota transplantation from patients with depression into animal models induced depressive symptoms and metabolic changes.
Dietary Patterns
Diet, stress, antibiotics, and environment significantly alter gut microbiota composition, for example reducing diversity and shifting the Firmicutes/Bacteroidetes ratio. Sedentary work, lack of exercise, a Western high-carbohydrate diet, and processed food are additional well-established risk factors for IBS.
Sex and Hormones
IBS is almost twice as prevalent in women, with the relative risk of IBS in women compared with men being 1.67 in a study of 188,229 subjects, pointing to a hormonal relationship.
Intestinal Permeability ("Leaky Gut")
The disruption of the brain–gut axis — the major bidirectional communication pathway between the brain and the gastrointestinal system, which incorporates both afferent and efferent signals involving neuronal, hormonal, and immunologic pathways — can result in sequelae such as chronic dysfunction of the gastrointestinal system and disability. The imbalance of the microbiota will destroy the intestinal barrier tight junction protein, leading to the entry of inflammatory factors into the nervous system and causing cognitive impairment.
Nutrients, Herbs, and Natural Ingredients
Short-Chain Fatty Acids (SCFAs)
The SCFAs acetate, propionate, and butyrate are the main metabolites produced in the colon by bacterial fermentation of dietary fibers and resistant starch. SCFAs, the main metabolites produced in the colon by bacterial fermentation of dietary fibers and resistant starch, are speculated to play a key role in neuro-immunoendocrine regulation.
Butyrate can inhibit histone deacetylase, modulate gene expression, influence immune functionality, and regulate tight junction integrity, supporting the idea of its role in gut barrier preservation. Research indicates that butyrate can alleviate neurological disorders, including Alzheimer's, Parkinson's, autism spectrum disorder, and Huntington's disease, by reducing neuroinflammation, enhancing neurotransmitter modulation, and improving histone acetylation.
Evidence strength: SCFAs are speculated to play a key role in neuro-immunoendocrine regulation; however, the underlying mechanisms through which SCFAs might influence brain physiology and behavior have not been fully elucidated. Most supportive data remain preclinical or mechanistic. Medical literature extensively documents the supplementation of SCFAs, particularly butyrate, in the treatment of gastrointestinal, metabolic, cardiovascular, and gut-brain-related disorders, but large-scale human clinical trials are limited.
Dietary Fiber and Resistant Starch (Prebiotics)
The gastrointestinal tract is home to trillions of diverse microorganisms, which play a pivotal role in breaking down undigested foods such as dietary fibers. Through the fermentation of these food components, SCFAs such as acetate, propionate, and butyrate are produced, offering numerous health benefits to the host. The production and absorption of these SCFAs occur through various mechanisms within the human intestine, contingent upon the types of dietary fibers reaching the gut and the specific microorganisms engaged in fermentation.
A 3-month fiber-rich diet in patients with type 2 diabetes showed an increase in SCFA-producing bacteria F. prausnitzii and A. muciniphila, as well as a decrease in glucose, total and LDL cholesterol, free fatty acids, and hemoglobin A1c (HbA1c), suggesting that long-term adherence to a high-fiber diet might improve dyslipidemia, glycemic control, and inflammation by increasing SCFA-producing bacteria.
Tryptophan
Microorganisms can influence CNS processes via modulation of tryptophan metabolism, the precursor to serotonin. Tryptophan metabolites represent one class of microbial metabolites — alongside SCFAs and bile acids — that modulate neuroinflammation, blood–brain barrier integrity, and broader neuropathological processes. Specific microbial metabolites, such as indole derivatives from tryptophan metabolism, can counteract NF-κB activation and provide neuroprotective effects.
Evidence strength: The tryptophan–serotonin axis is well-established mechanistically and supported by multiple preclinical and observational studies. Interventional human trials targeting tryptophan specifically for gut–brain outcomes remain limited and preliminary.
Omega-3 Fatty Acids
Bioactive compounds like prebiotics, omega-3 fatty acids, and polyphenols exhibit neuroprotective effects by modulating gut microbiota and reducing neuroinflammation. An open-label and randomized trial increased gut microbial SCFAs indirectly by using an omega-3 polyunsaturated fatty acid supplement drink or capsule, which led to an increase in SCFA-producing bacteria (e.g., Bifidobacterium, Roseburia, and Lactobacillus) in humans, indicating a promising approach to improving gut dysfunction and depressive symptoms.
Evidence strength: Human trials using omega-3 supplementation show positive effects on SCFA-producing bacteria and inflammatory markers, but direct gut–brain outcome trials are preliminary. Overall, the evidence is promising but requires larger confirmatory studies.
Probiotics and Psychobiotics
Certain probiotic strains — often termed "psychobiotics" — can modulate the gut microbiota composition and metabolic activity, enhancing the production of neuroactive compounds such as GABA, serotonin precursors, and SCFAs. Probiotics indirectly alter CNS function by producing metabolites that influence serotonin levels, brain-derived neurotrophic factor (BDNF), dopamine, and GABA.
Scientific Evidence — Depression: A systematic review of randomized clinical trials conducted from January 2000 to December 2023 examined the efficacy of psychobiotics in adults with psychiatric and cognitive disorders. Out of the 51 studies involving 3,353 patients (half of whom received psychobiotics), there was a notably high measurement of effectiveness specifically in the treatment of depression symptoms. Most participants were older and female, with treatments commonly utilizing strains of Lactobacillus and Bifidobacteria over periods ranging from 4 to 24 weeks.
A 2023 meta-analysis of 13 RCTs with 786 participants estimated the effectiveness of pre-, pro-, and synbiotics on clinical depression symptoms and found an overall small effect-size reduction in depression severity (standardized mean difference [SMD] = −0.34; 95% CI: −0.45, −0.22) in favor of the treatment group compared with placebo controls. Subgroup analysis revealed that only probiotics — both single and multiple strain — were associated with significant, small effect-size reductions in depression severity.
Clinical trials investigating strains such as Lactobacillus rhamnosus, Bifidobacterium longum, Lactobacillus gasseri, and multi-strain formulations have demonstrated strain- and context-specific effects on psychological and physiological outcomes. While some studies reported improvements in mood, anxiety, sleep quality, and cognitive performance, others showed limited effects, particularly in healthy populations with low baseline stress levels, reflecting the challenges of translating preclinical findings into clinical applications in humans.
Limitations: The variability in treatment approaches and clinical presentations limits the comparability and generalization of findings. This underscores the need for more personalized treatment optimization and a deeper investigation into the mechanisms through which psychobiotics act. Probiotic supplements are thought to have largely positive effects on mental health when taken in sufficient amounts; however, despite extensive research, there is a lack of consistent findings on the effects of probiotics on anxiety and depression and the associated microbiome alterations.
Curcumin (Curcuma longa)
Traditional Use: Curcumin (CUR) is a lipophilic natural polyphenol isolated from the rhizome of turmeric. Studies have proposed that CUR possesses a variety of biological activities. Turmeric has been used for centuries in Ayurvedic and traditional Chinese medicine as an anti-inflammatory and digestive agent.
Scientific Evidence: It is possible that curcumin could exert direct regulative effects primarily in the gastrointestinal tract, where high concentrations are present after oral administration. A working hypothesis that could explain the neuroprotective role of curcumin despite its limited bioavailability is that it acts indirectly on the CNS by influencing the microbiota–gut–brain axis — a complex bidirectional system in which the microbiome and its composition represent a factor which preserves and determines brain "health." Curcumin and its metabolites might provide benefit by restoring dysbiosis of the gut microbiome.
Curcumin and its metabolites can have health benefits by eliminating intestinal microflora dysbiosis. In addition, curcumin undergoes enzymatic modifications by bacteria, forming pharmacologically more active metabolites than their parent compound, curcumin.
The gut–brain axis has attracted increasing attention owing to its regulatory effect on dysbiosis and a wide range of related diseases. Several types of nutrients, such as curcumin, have been proposed as regulators of the dysbiotic state, and preclinical experiments have suggested that curcumin is not only beneficial but also safe.
Evidence strength: A discrepancy exists between the well-documented pharmacological activities that curcumin seems to possess in vivo and its poor aqueous solubility, bioavailability, and pharmacokinetic profiles that should limit any therapeutic effect. Most human evidence comes from small trials; gut–brain specific human clinical data on curcumin remain preliminary.
Ginkgo biloba, Ginseng, and Other Traditional Neurological Herbs
Traditional Use: Herbal medicine has been used for centuries to treat human diseases, including neurodegenerative diseases.
Scientific Evidence: The use of herbal medicine formulations such as Ginkgo biloba, ginseng, and Polygala tenuifolia has demonstrated promising effects in preclinical studies. These herbs contain active metabolites that, once biotransformed by the gut microbiota, can cross the blood–brain barrier and exert therapeutic effects directly within the CNS.
Evidence strength: The evidence for Ginkgo biloba, ginseng, and related herbs acting specifically via the gut–brain axis is primarily preclinical. Clinical trials remain limited and largely exploratory.
German Chamomile (Matricaria chamomilla)
Traditional Use: German chamomile (Matricaria chamomilla L.) is a ubiquitous annual plant with a rich history in traditional European medicine, and has been a cornerstone of herbal remedies for centuries, particularly for its calming, anti-inflammatory, and spasmolytic effects on the gastrointestinal tract.
Scientific Evidence: Iberogast (STW 5) is a well-studied herbal preparation that has been tested in numerous clinical trials. It is a herbal medicine containing extracts from nine plants, including chamomile flowers. Chamomile has demonstrated GI-spasmolytic activity, and Iberogast has clinical evidence for functional dyspepsia and IBS. Chamomile preparations are commonly used to support the treatment of various human ailments, such as allergic rhinitis, inflammatory conditions, muscle cramps, menstrual irregularities, insomnia, and peptic ulcers. Chamomile extracts are used most frequently for oral cavity inflammatory conditions and in the treatment of stomach inflammations.
Evidence strength: Chamomile's role in gastrointestinal spasm is supported by traditional use and the multi-herb preparation Iberogast (with several clinical trials). Studies specifically isolating chamomile's effect on the gut–brain axis are limited.
Ashwagandha (Withania somnifera)
Traditional Use: Withania somnifera is a plant commonly referred to as ashwagandha. The plant root has been used for its health-promoting effects. In Ayurveda, ashwagandha is classified as a rasayana (rejuvenating tonic) traditionally used for stress, debility, and cognitive function.
Scientific Evidence: Research supports the use of W. somnifera to help with stress and sleep. Ashwagandha combined with okra (Abelmoschus esculentus) as a dual-herb supplement has shown promise in improving both GI regularity and mood by modulating the gut–brain axis. This combination has demonstrated adaptogenic function and has been shown to increase serotonin.
Evidence strength: Ashwagandha's stress-reducing effects have support from small-to-moderate-size RCTs. Its specific modulation of the gut–brain axis is preliminary and often studied in combination preparations rather than in isolation.
Polyphenols (General)
Certain dietary compounds, such as polyphenols found in plant-based foods, have been shown to support brain function by modulating gut bacteria and reducing oxidative stress. Microbial modulation of host gene expression via epigenetic mechanisms, including microRNAs, adds another layer of complexity to how plant-derived polyphenols may act through the microbiome.
Evidence strength: Evidence for dietary polyphenols (resveratrol, quercetin, catechins, etc.) acting on the gut–brain axis is largely mechanistic and preclinical. Human interventional trials are few and often underpowered.
Dietary and Lifestyle Factors
The Mediterranean Diet
The Mediterranean diet — characterized by high intake of fiber, polyphenols, omega-3 fatty acids, and fermented foods — promotes microbial diversity and increases the abundance of beneficial taxa such as Bifidobacterium and Lactobacillus, as well as SCFA-producing species such as Faecalibacterium prausnitzii.
A transversal study with 31 healthy individuals showed that those following a 6-month Mediterranean diet presented higher propionate and butyrate concentrations in feces, and higher levels of Bifidobacterium and Faecalibacterium, compared to those following a lower-fiber diet.
Taken together with current clinical evidence, these mechanisms help explain why adherence to the Mediterranean diet may translate into more favorable microbial profiles and the cognitive benefits observed in recent cohorts and systematic reviews.
Fermented Foods
Preliminary placebo-controlled human studies have shown that oral probiotic microbes can decrease anxiety, diminish perceptions of stress, and improve mental outlook. The consumption of fermented foods, berries, nuts, and probiotic supplements improves working memory and attention across different populations.
High-Fat and Ultra-Processed Western Diets
Factors that trigger dysbiosis, such as high fat consumption, could act by promoting the production of pro-inflammatory bacterial metabolites. Recent research has underscored the significant role of diet in modulating the gut–brain axis, with attention to how specific dietary patterns can impact anxiety and depression, particularly when linked to disorders of gut–brain interaction like IBS.
Physical Activity
An individual's gut microbiota composition depends on, among other factors, nutrition and physical activity. Sedentary work and lack of exercise are additional well-established risk factors for IBS and, by extension, gut–brain axis dysregulation.
Stress Management and Psychological Factors
The GBA framework also provides insight into the connection between psychiatric and GI disorders, with mood disorders such as anxiety and depression highly prevalent among patients with GI disorders like IBS. Recent research points to a role of intestinal microbiota in visceral hypersensitivity, anxiety, and depression. Increased disease reactivity to psychological stress has been described. These observations underscore that managing psychological stress through behavioral interventions may, through the GBA, exert downstream effects on gastrointestinal health and microbiome composition.
Age and the Gut–Brain Axis
Other factors that may exacerbate existing gut–brain dysregulation include poor diet and physiological changes from aging, like increased inflammatory response, decreased neurotransmitters, and increased oxidative stress.
Personalized Nutrition
Emerging research highlights the role of personalized nutrition in mental health, emphasizing the need for tailored dietary recommendations based on an individual's microbiome composition. The heterogeneity in treatment responses across studies reflects fundamental individual differences in microbiome composition, host genetics, and environmental factors.
Summary of Evidence Levels
- Well-established (human clinical and mechanistic evidence): The anatomical and physiological existence of the gut–brain axis; the central role of the vagus nerve, ENS, HPA axis, and serotonin in gut–brain communication; the impact of dysbiosis on GI and neuropsychiatric conditions; dietary fiber and prebiotic fermentation to SCFAs; Mediterranean diet associations with favorable microbiome profiles.
- Supported by clinical trials with noted limitations: Probiotic/psychobiotic interventions for depression (small-to-moderate effect sizes; high heterogeneity across studies; strain- and population-specific outcomes); omega-3 fatty acids for microbiota modulation.
- Preliminary or largely preclinical: Curcumin acting on the gut–brain axis via microbiome modulation; specific polyphenols; ginkgo, ginseng, and other traditional botanicals acting through MGBA pathways; butyrate supplementation in neurological disorders.
- Traditional use with limited human interventional data: German chamomile (GI spasmolytic in combination products); ashwagandha (adaptogenic stress support, with some human trial evidence); fermented foods as delivery vehicles for live cultures.
References
- Carabotti M, et al. (2015). The gut-brain axis: interactions between enteric microbiota, central and enteric nervous systems. Annals of Gastroenterology. PMC4367209.
- Wikipedia: Gut–brain axis (overview and references to primary sources)
- PMC12440273 — Role of the gut-brain axis in neurological diseases: Molecular connections and therapeutic implications (Review). PMC, 2025.
- Mayer EA, Nance K, Chen S. (2022). The Gut–Brain Axis. Annual Review of Medicine, 73:439–453.
- PMC12293201 — Rewiring the Brain Through the Gut: Insights into Microbiota–Nervous System Interactions. PMC, 2025.
- Frontiers in Microbiomes — The gut–brain connection: microbes' influence on mental health and psychological disorders. 2025.
- PMC5808284 — The Vagus Nerve at the Interface of the Microbiota-Gut-Brain Axis. Frontiers in Neuroscience, 2018.
- PMC7589356 — Gut–Brain Axis: Role of Gut Microbiota on Neurological Disorders and How Probiotics/Prebiotics Modulate Microbial and Immune Pathways. PMC, 2020.
- PMC5046167 — Irritable bowel syndrome, the microbiota and the gut-brain axis. PMC, 2016.
- PMC11510627 — Gut–Brain Axis and Psychopathology: Exploring the Impact of Diet with a Focus on the Low-FODMAP Approach. PMC, 2024.
- PMC5860136 — Intestinal microbiome-gut-brain axis and irritable bowel syndrome. PMC, 2018.
- PMC4879184 — From gut dysbiosis to altered brain function and mental illness: mechanisms and pathways. PMC, 2016.
- PMC4458706 — Gut-microbiota-brain axis and effect on neuropsychiatric disorders with suspected immune dysregulation. PMC, 2015.
- PMC10867509 — Exploring the serotonin-probiotics-gut health axis: A review of current evidence and potential mechanisms. PMC, 2024.
- PMC11818468 — Interaction of the Vagus Nerve and Serotonin in the Gut–Brain Axis. PMC, 2025.
- PMC9274469 — Enterochromaffin Cells–Gut Microbiota Crosstalk: Underpinning the Symptoms, Pathogenesis, and Pharmacotherapy in Disorders of Gut-Brain Interaction. PMC, 2022.
- PMC10455396 — The Impact of Microbiota on the Gut–Brain Axis: Examining the Complex Interplay and Implications. PMC, 2023.
- PMC11085935 — Effectiveness of Psychobiotics in the Treatment of Psychiatric and Cognitive Disorders: A Systematic Review of RCTs. PMC, 2024.
- PMC12166186 — Effects of Prebiotics and Probiotics on Symptoms of Depression and Anxiety: Systematic Review and Meta-analysis of RCTs. PMC, 2024.
- PMC10893170 — Probiotics' Effects in the Treatment of Anxiety and Depression: A Comprehensive Review of 2014–2023 Clinical Trials. PMC, 2024.
- Frontiers in Microbiology — Psychobiotics in mental health: insights from human clinical trials via the gut-brain axis. 2026.
- PMC7005631 — The Role of Short-Chain Fatty Acids From Gut Microbiota in Gut-Brain Communication. PMC, 2020.
- PMC7551052 — Interaction between Gut Microbiota and Curcumin: A New Key of Understanding for the Health Effects of Curcumin. PMC, 2020.
- PMC7037549 — Mutual Two-Way Interactions of Curcumin and Gut Microbiota. PMC, 2020.
- PMC6835970 — Curcumin, Gut Microbiota, and Neuroprotection. PMC, 2019.
- PMC10830735 — Herbal medicine and gut microbiota: exploring untapped therapeutic potential in neurodegenerative disease management. PMC, 2024.
- PMC11319522 — Addressing GI Health Through the Bidirectional Modulation of the Gut-Brain Axis With Herbal Extracts: A Narrative Review. PMC, 2024.
- PMC12652186 — Medicinal Plants for a Healthy Gut Microbiome: Scientific Insights into Modern Herbal Applications. PMC, 2025.
- PMC3904694 — Fermented foods, microbiota, and mental health: ancient practice meets nutritional psychiatry. PMC, 2014.
- PMC8007165 — The role of short-chain fatty acids in the interplay between gut microbiota and diet in cardio-metabolic health. PMC, 2021.
- PMC10882305 — Gut microbiota-derived short-chain fatty acids and depression: deep insight into biological mechanisms and potential applications. PMC, 2024.
- PMC12071848 — Could a Mediterranean Diet Modulate Alzheimer's Disease Progression? The Role of Gut Microbiota and Metabolite Signatures in Neurodegeneration. PMC, 2025.
- PMC10936641 — A modified Mediterranean-style diet enhances brain function via specific gut-microbiome-brain mechanisms. PMC, 2024.
- PMC11853140 — Gut–Brain Axis and Brain Microbiome Interactions from a Medical Perspective. PMC, 2025.
- PMC12296502 — Short-chain fatty acids mediate enteric and central nervous system homeostasis in Parkinson's disease. PMC, 2025.
- PMC12925874 — The Intestinal Cues Promoting Serotonin Release From the Human Gut. PMC, 2025.
- PMC12689588 — Transforming mental health: the future of personalized psychobiotics in anxiety and depression therapy. PMC, 2025.
- Frontiers in Microbiology — Brain-gut-microbiota axis: a review on bidirectional regulatory mechanisms and disease interactions. 2026.
- PMC12645147 — Restoring Gut-brain Function by Medicinal Herbs Offering Neuroprotection through Suppressing Inflammatory Pathways: A Systematic Review. PMC, 2025.
- PMC12366197 — The Gut-Brain Axis and Mental Health: How Diet Shapes Our Cognitive and Emotional Well-Being. PMC, 2025.
- PMC11052165 — The Modulatory Effects of Curcumin on the Gut Microbiota: A Potential Strategy for Disease Treatment and Health Promotion. PMC, 2024.
- PMC12029953 — Beyond the Gut: Unveiling Butyrate's Global Health Impact Through Gut Health and Dysbiosis-Related Conditions: A Narrative Review. PMC, 2025.
- Park S, et al. (2023). The Effect of Curcumin on the Gut-Brain Axis: Therapeutic Implications. Journal of Neurogastroenterology and Motility.
Natural Remedies
Ingredients
- 2'-fucosyllactoseScientific
2'-Fucosyllactose (2'-FL) is the most abundant human milk oligosaccharide and functions as a prebiotic that specifically promotes Bifidobacterium growth and gut-brain axis development in infants. Research shows 2'-FL modulates gut microbiota composition, promotes SCFA production, and influences brain development and behavioral outcomes through gut-brain axis mechanisms.
- 5-HTP (5-hydroxytryptophan)Scientific
5-HTP is the direct precursor to serotonin, approximately 95% of which is produced in the gut, placing it at the heart of the gut-brain axis. Research in preclinical models shows oral 5-HTP significantly restores gut microbiota dysbiosis associated with depression-like behaviors. It also increases serotonin levels in both the gastrointestinal tract and the brain, directly linking gut serotonin signaling to central mood regulation.
- akkermansia muciniphilaScientific
Akkermansia muciniphila is a next-generation probiotic bacterium residing in the gut mucus layer, increasingly recognized for modulating the gut-brain axis. Preclinical studies demonstrate it reduces neuroinflammation, improves cognitive function, and ameliorates depression-like behaviors in stressed animals. Its mechanisms include regulation of serotonin levels, BDNF expression, and intestinal/blood-brain barrier integrity.
- ALA (alpha-linolenic acid)Scientific
Alpha-linolenic acid (ALA) is a plant-derived omega-3 fatty acid that serves as a precursor to EPA and DHA and contributes to gut-brain axis function through conversion to longer-chain omega-3s and direct anti-inflammatory effects on gut microbiota. It modifies gut microbial community composition and influences neuroinflammatory markers relevant to mood and cognition.
- bacillus coagulansScientific
B. coagulans operates through the gut-brain axis, modulating gut microbiota to influence neurotransmitter levels (serotonin, GABA, dopamine), inflammatory cytokines, and short-chain fatty acids, with documented effects on depression, anxiety, and stress in clinical trials. Multiple RCTs have measured gut-brain axis biomarkers alongside psychological outcomes.
- benegut perillaScientific
The published clinical trial on Benegut explicitly frames the gut-brain axis as a central mechanistic rationale, noting that psychosocial stress alters gut physiology via ileum contractions, producing GI symptoms. Clinical improvement in psychosocial quality-of-life outcomes associated with GI discomfort was documented in the Benegut trial. Perilla frutescens compounds including rosmarinic acid also show antidepressant-related activity in preclinical work.
- berberineScientific
Berberine reshapes gut microbiota composition, modulates enteroendocrine signaling (GLP-1, dopamine precursors), and reduces intestinal barrier permeability, with downstream effects on neuroinflammation and brain function. Clinical and preclinical data document BBR's dual action on both gut homeostasis and neural signaling via the microbiome-gut-brain axis.
- bifidobacteriumScientific
Bifidobacterium species are among the most extensively studied probiotics for the gut-brain axis. Multiple strains, particularly B. longum, have shown in human RCTs the ability to reduce stress, improve memory, and modulate brain activity patterns. They produce GABA and increase tryptophan availability, linking gut microbiota to central neurotransmitter regulation.
- bifidobacterium adolescentisScientific
Bifidobacterium adolescentis is a GABA-producing gut bacterium with demonstrated relevance to the gut-brain axis. It contributes to GABAergic signaling in the gut that can influence brain function and has been shown to affect mental health markers through gut microbiota modulation. It is one of several Bifidobacterium species identified as capable of direct neurotransmitter production.
- bifidobacterium animalisScientific
Bifidobacterium animalis, particularly subspecies lactis, has been studied in gut-brain axis research including a landmark fMRI study showing reduced emotional brain activation following fermented milk consumption. It contributes to gut barrier integrity, SCFA production, and modulation of the HPA stress axis.
- bifidobacterium bifidumScientific
Bifidobacterium bifidum has been studied in probiotic formulations targeting gut-brain axis function, including studies in Alzheimer's disease patients where combinations including B. bifidum improved cognitive performance and metabolic profiles. It supports gut barrier integrity and anti-inflammatory signaling relevant to neuropsychiatric health.
- bifidobacterium breveScientific
Bifidobacterium breve has strong clinical evidence for gut-brain axis effects, notably in cognitive health. B. breve MCC1274 at 2×10¹⁰ CFU/day for 24 weeks reduced cognitive decline and halted brain atrophy in elderly MCI subjects. It also shows neuroprotective effects in animal models of Alzheimer's disease and stress.
- bifidobacterium infantisScientific
Bifidobacterium infantis has been specifically shown to increase plasma tryptophan levels and influence central serotonin transmission, directly linking it to the gut-brain axis. It is classified as a key psychobiotic strain and has shown anti-inflammatory and mood-modulating effects in IBS and stress research.
- bifidobacterium lactisScientific
Bifidobacterium lactis is widely studied for gut health and has documented effects on the gut-brain axis through SCFA production, gut barrier enhancement, and immune modulation. Clinical fMRI evidence shows fermented milk products containing B. lactis strains reduce emotional brain activation. It is a common component of multi-strain psychobiotic formulations.
- bifidobacterium longumScientific
Bifidobacterium longum, particularly strains 1714® and 35624®, has the strongest human clinical evidence among Bifidobacterium species for gut-brain axis effects. RCTs show strain 1714® reduces tension and improves memory in healthy volunteers, with measurable EEG and cortisol changes. It is the paradigmatic 'psychobiotic' strain.
- butyrate triglycerideScientific
Butyrate is a key mediator of gut-brain axis signaling, acting via vagal afferent pathways, enteroendocrine cells, BDNF upregulation, and neuroinflammation suppression. Tributyrin, as a colonic butyrate delivery vehicle, is now being specifically investigated in a human RCT for its effects on the microbiota-gut-brain axis in depression. The gut-brain connection is the mechanistic framework underpinning tributyrin's neurological research.
- butyric acidScientific
Butyric acid is a short-chain fatty acid (SCFA) produced by gut bacterial fermentation of dietary fiber and is a primary mediator of the gut-brain axis. It crosses the blood-brain barrier, influences neuroplasticity, and regulates neurotransmitter synthesis. Tributyrin, its prodrug, has been shown in a clinical study to deliver measurable gut-brain axis benefits for mental well-being.
- coptis chinensisScientific
Berberine from Coptis chinensis modulates the microbiota-gut-brain axis in animal models of IBS and visceral hypersensitivity, reducing spinal microglial activation and depressive-like behaviors via gut microbiota changes. TCM historically associated Coptis with emotional states connected to gut heat.
- curcuminScientific
Curcumin, the principal bioactive of turmeric, has been specifically studied for its effects on the gut-brain axis. Research shows it attenuates gut inflammation, restores intestinal tight junction proteins, reduces neuroinflammation, and modulates gut microbiota composition. A dedicated study published in the Journal of Neurogastroenterology and Motility confirmed its therapeutic implications for the gut-brain axis.
- DHA (docosahexaenoic acid)Scientific
DHA is a long-chain omega-3 PUFA with well-established gut-brain axis activity. It modulates gut microbiota composition by promoting Bifidobacterium and Lactobacillus populations, maintains gut and blood-brain barrier integrity, supports neurogenesis and synaptic plasticity, and reduces neuroinflammation. Clinical evidence links DHA deficiency to depression and cognitive impairment.
- EPA (eicosapentaenoic acid)Scientific
EPA is the most clinically active omega-3 fatty acid for depression and gut-brain axis modulation. Multiple meta-analyses of RCTs confirm small-to-moderate antidepressant effects of EPA-rich formulations. EPA promotes beneficial gut microbial populations, reduces gut and systemic inflammation, and regulates the HPA axis.
- FOS (fructooligosaccharides)Scientific
Fructooligosaccharides (FOS) are classified prebiotics that selectively feed beneficial gut bacteria—especially Bifidobacterium and Lactobacillus—to produce SCFAs and regulate serotonin metabolism. Animal studies show FOS alleviates anxiety and depression-like behaviors via the microbiome-gut-brain axis, and FOS is among the most studied prebiotics for neuropsychiatric modulation.
- GABA (gamma aminobutyric acid)Scientific
GABA is the brain's primary inhibitory neurotransmitter and is also synthesized in significant amounts by gut bacteria (notably Lactobacillus and Bifidobacterium species). Gut-derived GABA can signal to the brain via the enteric nervous system and vagal pathways, making it a direct molecular mediator of the gut-brain axis. Research links gut GABA production to anxiety, depression, and stress regulation.
- galactooligosaccharidesScientific
Galacto-oligosaccharides (GOS) are prebiotics with clinical RCT evidence for gut-brain axis effects in humans. A controlled study showed GOS consumption reduced anxiety and increased beneficial gut microbial populations in healthy young females. GOS selectively feeds Bifidobacterium species, promotes SCFA and GABA production, and modulates neuroinflammatory pathways.
- ganodermaScientific
Preclinical evidence shows Ganoderma lucidum promotes sleep and modulates mood via a gut microbiota-serotonin axis, with GLAA extract increasing hypothalamic 5-HT levels through changes in gut bacteria and metabolites. This positions G. lucidum at the intersection of the gut-brain axis.
- glutamic acidScientific
Glutamate is a recognized neurotransmitter/neuromodulator along the microbiota-gut-brain axis, expressed at glutamate transporters on intestinal epithelial cells and in enteric neurons. Gut bacteria produce glutamate, which can activate enteric and vagal afferent pathways signaling to the brain. Glutamate receptor signaling in the gut participates in visceral sensory transmission, intestinal motility, and stress-related secretory responses.
- inulinScientific
Inulin is a soluble prebiotic fiber with documented effects on the gut-brain axis. Studies show inulin increases SCFA-producing bacteria and serotonin (5-HT) metabolism, with animal research demonstrating alleviation of anxiety and depression-like behaviors via the microbiome-gut-brain axis. Clinical trials in schizophrenia patients show oligofructose-enriched inulin increases serum butyrate.
- kefirScientific
Kefir is a fermented dairy beverage containing diverse probiotic bacteria and yeasts, with established evidence for gut-brain axis modulation. It is specifically cited in authoritative scientific literature as a fermented food supporting the gut-brain connection through beneficial microbial delivery. Animal and human research links kefir consumption to reduced anxiety, improved memory, and gut microbiota diversification.
- L-glutamineScientific
L-glutamine is the primary fuel source for intestinal enterocytes and maintains gut tight junctions, making it a structural support molecule for the gut-brain axis. It is a direct precursor to both glutamate (the primary excitatory neurotransmitter) and GABA (the primary inhibitory neurotransmitter), and can cross the blood-brain barrier. A randomized controlled trial showed L-glutamine reduced intestinal permeability in post-infectious IBS, a condition strongly linked to the gut-brain axis.
- L-theanineScientific
L-theanine, the primary amino acid in tea leaves, modulates the gut-brain axis by reshaping gut microbiota composition, restoring SCFA production, and down-regulating gut-brain inflammatory pathways. A 2025 study in npj Science of Food showed l-theanine reversed CUMS-induced depressive-like behavior via the gut-short-chain fatty acids-brain axis, with restored 5-HT, dopamine, and GABA levels.
- L-tryptophanScientific
L-tryptophan is the dietary precursor to serotonin and is directly regulated by the gut microbiota through both the serotonin and kynurenine pathways. It is a central node in the microbiota-gut-brain axis, with gut bacteria controlling tryptophan availability for brain serotonin synthesis. Depletion studies confirm low tryptophan impairs mood and memory, linking gut tryptophan metabolism to neuropsychiatric health.
- lactobacillusScientific
Lactobacillus genus bacteria are core psychobiotic microorganisms with extensive evidence for gut-brain axis effects. Multiple strains produce GABA, influence serotonin synthesis, reduce cortisol, and modulate brain GABA receptor expression via vagal nerve signaling. Systematic reviews confirm Lactobacillus strains exhibit anxiolytic and antidepressant effects in both animal and human studies.
- lactobacillus acidophilusScientific
Lactobacillus acidophilus is a widely studied probiotic with documented gut-brain axis effects including improved cognitive performance in Alzheimer's disease patients when combined with other strains. It supports gut barrier integrity, produces serotonin-relevant metabolites, and is among the most common strains in psychobiotic research formulations.
- lactobacillus brevisScientific
Lactobacillus brevis is recognized as one of the primary GABA-producing bacteria in the human gut microbiome, directly relevant to the gut-brain axis. GABA synthesized by L. brevis via glutamate decarboxylase can signal through the enteric nervous system to the brain. Its GABA production capacity is physiological-state-dependent and has been characterized in peer-reviewed microbiology studies.
- lactobacillus caseiScientific
Lactobacillus casei has been studied in probiotic formulations demonstrating cognitive improvement in Alzheimer's disease patients. It is a component of multi-strain psychobiotic formulations and contributes to gut-brain axis modulation through SCFA production, gut barrier support, and immunomodulation relevant to neuropsychiatric conditions.
- lactobacillus fermentumScientific
Lactobacillus fermentum has been studied in probiotic combinations for cognitive improvement in Alzheimer's disease patients and is classified among psychobiotic Lactobacillus strains. It contributes to gut-brain axis function through GABA production, gut barrier integrity, and reduction of neuroinflammatory markers.
- lactobacillus gasseriScientific
L. gasseri CP2305 is one of the most studied probiotic strains for gut-brain axis modulation, with RCT evidence demonstrating improvements in stress, anxiety, sleep, and cortisol in humans. The strain acts via endocrine (HPA axis suppression), neural (vagus nerve activation), and immune (cytokine modulation) pathways.
- lactobacillus helveticusScientific
Lactobacillus helveticus, particularly strain R0052, has RCT evidence in humans for gut-brain axis effects including reduced anxiety and depression when combined with Bifidobacterium longum. An fMRI study showed that a combination including L. helveticus R0052 reduced activation in key emotional regulation brain areas. It is one of the best-characterized psychobiotic strains.
- lactobacillus paracaseiScientific
Lactobacillus paracasei is a gut-brain axis probiotic with evidence for stress reduction and HPA axis modulation. It contributes to the gut microbiome's capacity to regulate mood-related neurotransmitters and has been included in multi-strain psychobiotic formulations studied for anxiety and cognitive outcomes.
- lactobacillus plantarumScientific
Lactobacillus plantarum (now Lactiplantibacillus plantarum) has direct clinical evidence for gut-brain axis effects from an fMRI study showing reduced emotional brain activation after multi-strain probiotic consumption including this strain. It is a GABA producer and has been studied for anxiety reduction and cognitive modulation in both animal and human research.
- lactobacillus reuteriScientific
Lactobacillus reuteri is a uniquely positioned gut-brain axis probiotic that produces the neurotransmitter precursor histamine from histidine in the gut and influences oxytocin release via vagal nerve signaling. Animal studies show L. reuteri reduces autism-like social deficits and anxiety via gut-brain axis oxytocin pathways. It is one of the few probiotics with mechanistic evidence for direct vagal neurotransmitter signaling.
- lactobacillus rhamnosusScientific
Lactobacillus rhamnosus (particularly strain GG and JB-1) has some of the most mechanistically detailed gut-brain axis evidence. Animal studies definitively established that L. rhamnosus JB-1 alters GABA receptor expression in the brain via the vagus nerve, with vagotomy abolishing all effects. Human RCTs show L. rhamnosus GG improves memory performance and shifts gut microbiota composition.
- lactobacillus salivariusScientific
Lactobacillus salivarius is a gut and oral probiotic that has been included in psychobiotic formulations with documented gut-brain axis effects. It contributes to gut microbial balance, SCFA production, and systemic immune regulation relevant to neuroinflammation. It appears in peer-reviewed probiotic combinations studied for stress and mood modulation.
- lactococcus lactisScientific
GABA-producing L. lactis strains have been shown to modulate the gut-brain axis by upregulating GABA receptor expression in both the gut and brain in IBS mouse models, reducing visceral hypersensitivity and neurobehavioral abnormalities. Separately, engineered L. lactis has been used in optogenetic micro-nano systems to precisely regulate brain functions via vagal afferent signaling from the small intestine.
- lion's maneScientific
Lion's Mane modulates the gut-brain axis through its prebiotic polysaccharides, SCFA production, and NGF/BDNF stimulation. Animal studies show parallel improvements in gut microbiota and hippocampal neuroinflammation. A 2026 double-blind RCT noted improved subjective sleep and mood, with emerging data on gut-microbiome mediation.
- magnesiumScientific
Magnesium is an essential mineral involved in over 300 biochemical reactions and has documented gut-brain axis relevance. It modulates the HPA axis, supports GABA receptor function, reduces neuroinflammation, and influences gut microbiota composition. Magnesium deficiency is associated with anxiety and depression; supplementation in magnesium-deficient individuals improves mood and stress resilience.
- omega-3 fatty acidsScientific
Omega-3 fatty acids (EPA and DHA) are among the most studied nutrients for the gut-brain axis. They modulate gut microbiota composition, promote anti-inflammatory microbial populations, maintain intestinal and blood-brain barrier integrity, regulate HPA axis cortisol responses, and support neurogenesis. International nutritional psychiatry guidelines recommend omega-3s for depression.
- propionic acidScientific
Propionate is a key SCFA mediator of the gut-brain axis, crossing the blood-brain barrier to directly influence central nervous system function. It modulates neuroinflammation, hypothalamic appetite circuits, and neuropeptide expression. Human and animal evidence links gut-derived propionate to brain activity in food reward regions, neuroinflammatory states, and behavioral outputs including feeding and mood.
- reishi mushroomScientific
Reishi's prebiotic polysaccharides alter gut microbiome composition (Firmicutes:Bacteroidetes ratio), which intersects with the gut-brain axis via immune and vagal signalling. Animal research shows gut microbiome changes from reishi mediate improved sleep quality through altered tryptophan and serotonin metabolism. Human data are indirect — primarily microbiome mechanistic studies and sleep/stress RCTs.
- saccharomyces boulardiiScientific
Saccharomyces boulardii is a non-pathogenic yeast classified as a probiotic and is identified in peer-reviewed literature as a main probiotic member relevant to gut-brain axis modulation. It supports gut barrier function, reduces gut-derived neuroinflammation, and is among the most studied yeast probiotics for GI and systemic health with neurological implications.
- saffronScientific
Saffron (Crocus sativus) has clinical RCT evidence for antidepressant effects comparable to fluoxetine, with proposed mechanisms including serotonin pathway modulation and gut-brain axis engagement. A double-blind, placebo-controlled pilot RCT specifically investigated saffron's effects on the gut-sleep-brain axis, finding improvements in sleep quality alongside gut microbiota changes.
- streptococcus thermophilusScientific
Streptococcus thermophilus is a dairy probiotic bacterium that has been included in clinical gut-brain axis studies, including a landmark fMRI trial where a fermented milk product containing this strain reduced emotional brain activation. It is identified in the scientific literature as a serotonin precursor producer in the gut microbiome.
- tributyrinScientific
Tributyrin exerts effects along the gut-brain axis by preserving butyrate-producing bacteria, reducing neuroinflammation, and influencing hippocampal function. Animal studies demonstrate that oral tributyrin prevents cognitive and memory deficits in Alzheimer's disease models by protecting histone acetylation status in hippocampal neurons. A hepatoportal butyrate-sensing mechanism also links intestinal tributyrin metabolism to central sleep and neurological regulation.
- turmericScientific
Turmeric (Curcuma longa), through its bioactive curcumin, has direct peer-reviewed evidence for gut-brain axis modulation including restoration of gut tight junctions, reduction of gut and brain neuroinflammation, modulation of gut microbiota, and vagus nerve-mediated anti-inflammatory effects. A dedicated review in the Journal of Neurogastroenterology and Motility confirms its therapeutic implications for the gut-brain axis.
- urolithin aScientific
UA sits at the intersection of gut microbial metabolism and CNS health. It is produced by gut bacteria, crosses the blood-brain barrier, and its pleiotropic activities—including anti-inflammatory and mitophagy-inducing effects—are mechanistically relevant to the gut-brain axis. Preclinical data link gut-derived UA to neuroprotective outcomes via the gut-brain axis.
- kannaTraditional
Kanna's traditional use for abdominal pain combined with its activation of gut-relevant receptors (CCK, opioid) and serotonin modulation (the gut contains ~95% of the body's serotonin) provides a plausible but unstudied gut-brain mechanism. The traditional use for abdominal conditions reflects awareness of gut-related effects predating current gut-brain science.
- skullcapTraditional
Skullcap operates at the gut-brain interface through two complementary mechanisms: baicalin is converted to baicalein by gut bacteria (bidirectional gut-brain interaction), and it modulates both gut microbiota composition and central GABAergic/serotonergic signaling. TCM uses S. baicalensis for conditions involving both gastrointestinal and neurological symptoms.